rs50131848 SNP Detail

Summary

• ID
  rs50131848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122296907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGG GATAGCATTT GAAATGTAAA
  Y
  GAAGAAAATA TCTAATAATT TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147010267	ENSMUSSNP4503572	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss324857822	CHEV_14_122458717	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50131848					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122296907 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	1431 bp upstream
Rr404309	regulatory region 404309	1219 bp upstream
Rr498317	regulatory region 498317	1442 bp distal
Rr498318	regulatory region 498318	1121 bp distal
Rr498319	regulatory region 498319	1147 bp proximal
Rr498320	regulatory region 498320	1391 bp proximal
Tssr127312	transcription start site region 127312	1129 bp downstream
Tssr130315	transcription start site region 130315	1412 bp upstream