rs50131992 SNP Detail

Summary

• ID
  rs50131992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:106965470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCAGAAG CAGAGTTGGG
  CTTCTTAATC TAGGCCTAGT TAAACTTCCC CTATTGCCCA AGCAAAGAGA GGGGGTGGAA
  GTGCTAATTC GACCCTGTCA CAATCCAGCT ACCATAAAGG GAAGCCCTGT ATGCAAACCA
  CATTAAACCT ATCCTAAGAT TTGCAGAACT ACCAGGGTGG AGGGACAGGG CTGACAACCT
  Y
  ATCTCTGAAT TAAAAGGTAA AAGCTGGCCT GGTCACCTGG GTGCTCATCA GCTCTGAAGT
  ACTCCACAGT TCCAGAGCCA AGAGAGAGGC AAAGAAGAGA CGTGAGCATG TCTTGTGTGT
  TAAATATGCT ACATTCTGAG CCACAATGTT GCAACTGTAT TCAGAGTTAA AGTGAGCTAA
  TGGCTTCAAA CACACACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61697962	NES17635227	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50131992					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61697962	NES17635227	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:106965470 () rs orientation: forward

Symbol	Name	Function Class
Gm61206	predicted gene, 61206	549 bp upstream