rs50132749 SNP Detail

Summary

• ID
  rs50132749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113624978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCCCC AAATACTCTG
  TAAGTAGCAT TTTAGAACTT AAAAGTCTGC CTTTAAATTG TGTTAGCTGT AACAATATTC
  CAGAAATACG TTATTATATA CATTCCAACA GTAGTACCTA CTAGCCAATA TTCTTTTCAG
  TTCATTGCTT GCTATTATTA CTTGTTTAAA CAATTTTCCA ATCATATCAG TGAAAAGTAT
  Y
  TCAGACATTA TCAAACATAG CTGCTTTCTG GCAACCCTTC TCATCTTCAT ATGACTCGTG
  TGTGTATGTG TGTGTGTGTT TGTGTTCTCT TAGCTGCCTT TTGGTTTGCT TTATTTATTT
  GGTCTGCTTA CTTACACAGG TGTATGTGAA AGCCAGAGGT TAGTGCCTTT CTTCATTACT
  CTTGTGTATT TTCTAAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61225172	NES16842632	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs50132749					SNP	T	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61225172	NES16842632	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113624978 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Rr205836	regulatory region 205836	1377 bp distal