rs50133202 SNP Detail

Summary

• ID
  rs50133202
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48745271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAATCCA TAACTAATTA
  AGTTCGTTGG CAAAAGTAAA GTGTACAGAA TGAGGGCAAA CTCTCAGTTG AATTCAGTGT
  GGTTGTCGTG CAAGGGCCAG GGGCCAAGTT TCTGAAGAAG TTTCCCTGGG GAGACATGAA
  CGAACATATA TATTCATTCC AGAAAGGGCA CAACGAAAGA CCCAGCAAAC AGAAGATTCT
  M
  TTTATGTCTA GCTTGACAAA TGTGCTGCGA AGTCTTGTGC CAGCTTGACA CACAAACTAG
  AGTTACCCGA ACCTTAATTG AGAAAATGCC TTCATAAGAT CCGGCTGTAA GACCTTTTTC
  CTAATTAGTT ACTAATTGGG AATGGCCTAG CCCATTGTGG GTGGTGCCAT CCCTGGAATG
  GTGGTCCTTG GTGCTACAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132111680	ENSMUSSNP4947320	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50133202					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48745271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2785	CpG island 2785	952 bp distal
Cpgi2786	CpG island 2786	222 bp distal
Cpgi2787	CpG island 2787	879 bp proximal
Gm16170	predicted gene 16170	951 bp upstream
Gm73211	predicted gene, 73211	within coordinates
n-TPtgg4	nuclear encoded tRNA proline 4 (anticodon TGG)	1836 bp upstream
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	753 bp downstream
Rr402520	regulatory region 402520	893 bp downstream
Rr446140	regulatory region 446140	962 bp distal
Rr446141	regulatory region 446141	1236 bp distal
Rr446142	regulatory region 446142	461 bp distal
Rr446143	regulatory region 446143	772 bp distal