rs50133649 SNP Detail

Summary

• ID
  rs50133649
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27253683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTTGAAA AGTTGTTTTG
  TTTGTGTGTT TGTTTGTTTA TTTACTTATT TATTATTTTT GAAGCTGGGT CTCTGTTTGT
  AGCTCTTTCT GTCGTGGAAC TCACTACATA GACCAGGTTG GCTTTGAACT CACAGATAAA
  CTGCCTGCCT CTGCCCCTCT ACCCAGTGCT GGGATTAAAA GCCTCTGCTA TCATGCCAGG
  S
  TGGCTAAATA GTCTTATATA CTTGGTTTCC ACCTCACATC TGCATGCAAC TTACATTAGG
  TCTACAACTG TCCCAGTCTG TCACTAGTTT AGTTCAGATT TAATGAATAC CTGTCAGACG
  TAGTTGTAGG AACTTTGAGT TTGCTGTTTT AACCCCTCTA ATATATATAT TTTTTAATTT
  TAAATGACAT GTTTTATTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60985708	NES16135643	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50133649					SNP	G	G	G	G	C	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60985708	NES16135643	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27253683 () rs orientation: forward

Symbol	Name	Function Class
2310022A10Rik	RIKEN cDNA 2310022A10 gene	within coordinates
Cpgi18668	CpG island 18668	606 bp distal
Gm74065	predicted gene, 74065	988 bp downstream
Pld3	phospholipase D family member 3	1040 bp upstream
Rr167329	regulatory region 167329	within coordinates
Tssr65296	transcription start site region 65296	956 bp downstream
Tssr71425	transcription start site region 71425	1188 bp upstream
Tssr71426	transcription start site region 71426	1143 bp upstream
Tssr71427	transcription start site region 71427	1009 bp upstream