rs50133684 SNP Detail

Summary

• ID
  rs50133684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5650584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG AGCTGGTGGG ACATGTGCAG
  Y
  GTGAGCTGGT GGGGCATGTG CAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146012730	ENSMUSSNP899348	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50133684					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5650584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	1137 bp proximal
Rnaseh2c	ribonuclease H2, subunit C	1317 bp upstream
Rr370434	regulatory region 370434	1220 bp upstream
Tssr154457	transcription start site region 154457	1285 bp upstream
Tssr154458	transcription start site region 154458	1298 bp upstream