rs50134323 SNP Detail

Summary

• ID
  rs50134323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103254994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATAGAC TGTCTTGCCA
  CATATCACAC TGATGTCACT GCCCTCTAGG CGGTGAACAC TAGAGCAGAG ACACGTGTTA
  ATCTGGCCGA TCTGGACCTA CAAAGCCAGG AAATATTTGC ACAAAGCAAG ACCAGCCTCT
  ATCCATGTCC CCATCCTGCT TCTGACATTC TTGAGCTTGT CTTCTGCGAT CCAGACTTCT
  R
  ACCTTGAACT CACCTGAAGT TTCTTTTGGG GAAGCTGCCG AGGCAGGATC TGGTAGGGCA
  TCTTCAGAGC TTCATATACA GCCTCACACT GAAGGCTAAA TGGCTGGTAT TCCCGCTGTG
  GGTGGAGAAA GGTGGTCAGG GCAACCCCTA TGGGATTCAG AGGACACAGG GCTTCCCCAC
  AGTCTGTCTC AGGATGTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss52584121	NES15645602	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs50134323					SNP	A	A	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52584121	NES15645602	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103254994 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	within coordinates
Rr404655	regulatory region 404655	680 bp upstream
Rr510623	regulatory region 510623	830 bp proximal
Tssr136772	transcription start site region 136772	1993 bp upstream
Tssr136773	transcription start site region 136773	1911 bp upstream
Tssr136774	transcription start site region 136774	1843 bp upstream
Tssr136775	transcription start site region 136775	1800 bp upstream
Tssr136776	transcription start site region 136776	1778 bp upstream
Tssr136777	transcription start site region 136777	1734 bp upstream
Tssr136778	transcription start site region 136778	688 bp downstream