rs50135828 SNP Detail

Summary

• ID
  rs50135828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172039416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG CACTGGTGCT CAGCTCGAGG
  Y
  CACAGCACCC TAACCTCACC CAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007476	PARCsnp_1.17816	PARC_SEQ	INBRED	f	SNP			T	C
ss120010386	PARCsnp_1.07460	PARC_SEQ	INBRED	f	SNP			T	C
ss146184053	ENSMUSSNP6515833	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320123264	CHEV_1_174141980	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50135828					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172039416 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	1504 bp downstream
Tssr15168	transcription start site region 15168	1723 bp upstream
Tssr15169	transcription start site region 15169	1645 bp upstream
Tssr15170	transcription start site region 15170	1623 bp upstream
Tssr15171	transcription start site region 15171	1605 bp upstream
Tssr15172	transcription start site region 15172	1524 bp upstream
Tssr15173	transcription start site region 15173	1430 bp upstream
Tssr15174	transcription start site region 15174	1376 bp upstream
Tssr15175	transcription start site region 15175	134 bp downstream
Tssr15176	transcription start site region 15176	1215 bp downstream
Tssr15177	transcription start site region 15177	1269 bp downstream
Tssr15178	transcription start site region 15178	1293 bp downstream
Tssr15179	transcription start site region 15179	1315 bp downstream
Tssr15180	transcription start site region 15180	1520 bp downstream