rs50136218 SNP Detail

Summary

• ID
  rs50136218
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26085490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAGGAT TAACCAATCA
  GGTGATACTG TTTTGTCCAT GTGTCTATAG ATTCCCTCAA AGGGATGAAA TATAATCTCC
  CTGAAATTAC TCAAGAGACT TTGAAAAATA GGAATTAGAA TTGAGCACTT CGACCAATGG
  TTTTTATATT CTAATCCTGT AGTTAAGCTA GAACATAAAT AAAACACAGC CAAGTAGAGA
  K
  AGCACCAAGC AGCCAGTCAG TCAAGAGTGG TGCACACCTT TAAACCCAGC ACTCAGGAGC
  AGAAGTGGGC AGATGCCTGA GTTGGAGGCC ACCTTGGTCT AGAGTGAGTT CCAGGACATA
  GATACAAAAC AAACAACAAA AACAAAACCC CAAGACAAAC AAAAAGAAAA AGAAAGGAAG
  GAAGGAAGGA AGGAAGGAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60582835	NES16320679	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50136218					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60582835	NES16320679	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26085490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20188	CpG island 20188	1457 bp proximal
D830025C05Rik	RIKEN cDNA D830025C05 gene	1538 bp upstream
Gm45570	predicted gene 45570	368 bp upstream
Letm2	leucine zipper-EF-hand containing transmembrane protein 2	within coordinates
Rr368506	regulatory region 368506	1960 bp upstream
Rr400804	regulatory region 400804	1474 bp upstream
Rr661157	regulatory region 661157	1128 bp proximal
Rr661158	regulatory region 661158	1549 bp proximal
Tssr76686	transcription start site region 76686	1622 bp upstream
Tssr80717	transcription start site region 80717	1526 bp downstream
Tssr80718	transcription start site region 80718	1985 bp downstream