rs50136379 SNP Detail

Summary

• ID
  rs50136379
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992422 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A TTCTTCTACC TAGCCTTTGT TTTTTGCAAA GGAATGTTTT
  TTGGATGTGC CTTATGCACG ACAAACTCCT CAAGAGCCAC GGGTGTATAA GAGTACTAGT
  W
  TTCATTTAAA TTATACATTA TGCTTTGTGC ATAATGTGGA TAAACCTTTT ACACCCTGTA
  TATTTTTTAA GAAAAAGATT ATCTCTAATT GGGCAGATCA A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137110096	ENSMUSSNP1353284	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	A
ss145253568	ENSMUSSNP232292	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss146014236	ENSMUSSNP5203191	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss148925484	ENSMUSSNP6758000	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50136379					SNP	?	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992422 () rs orientation: reverse

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	within coordinates
Gm69636	predicted gene, 69636	within coordinates