rs50137229 SNP Detail

Summary

• ID
  rs50137229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:65072633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGAAGCAT TATAAGAATT
  CCAAACAGAC ACAAGCATGC CAAGATCACA GCGGTGCTCA GGACTGTAGG GATTCTCGGA
  GTAAGCTCAA GGATTGTCAG GCCAAGTTCT CAGCACAAAG GCGTGCCAGA GGACAGCCCC
  AGCAGGGACA GGGTACTAGA GAGGATGTAA GGAACAGACG AGAGGAGGGA TGAGTCAGAC
  R
  CCAAGACTGG GAGGCTTTGC AACTTCTGAC TGTCTGACAA TCAGAAAGTT TCTTTACTTA
  CACAGATTTT AAAACATTCA TGACTTCAAT AGGTGCAGAT CATATCAATG TATTCTGATC
  ATACTTTTCT AATATGCCCA GGGTTGCAGG TTAAGCCCAG GTAGAAAGGT TTTATTATTA
  TCAACCCCAT ATCCTTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62845442	NES17373253	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50137229					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62845442	NES17373253	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:65072633 () rs orientation: forward

Symbol	Name	Function Class
Dreh	down-regulated in hepatocellular carcinoma	1473 bp upstream
Rr392835	regulatory region 392835	682 bp downstream
Rr529706	regulatory region 529706	within coordinates