rs50138607 SNP Detail

Summary

• ID
  rs50138607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31278615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAC CTTGGGTCCA CAGATCTTGT
  Y
  TGCTCTTGGA AGCCAATCAG GGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145455245	ENSMUSSNP2874204	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325358448	CHEV_17_31196586	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50138607					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31278615 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	within coordinates
Cpgi8940	CpG island 8940	1280 bp distal
Gm55872	predicted gene, 55872	within coordinates
Rr525355	regulatory region 525355	1904 bp distal
Rr525356	regulatory region 525356	200 bp distal
Rr525357	regulatory region 525357	1557 bp distal
Rr525358	regulatory region 525358	1357 bp distal
Rr525359	regulatory region 525359	615 bp proximal
Tssr143637	transcription start site region 143637	1942 bp downstream
Tssr143638	transcription start site region 143638	1928 bp downstream
Tssr143639	transcription start site region 143639	1907 bp downstream
Tssr143640	transcription start site region 143640	1892 bp downstream
Tssr143641	transcription start site region 143641	1863 bp downstream