rs50139100 SNP Detail

Summary

• ID
  rs50139100
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48215807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGCAAGGGGA AGGAGTACCA AGTAAGTCTG TGCCAGTCTC
  TAGGATTAAT TTTGTCAAGG TCTCTTTAGA GTTTTATTTA TTATTTCTAT CTGTCCTGAG
  T
  TCTGAGGTCT GTACACATAA TACAATTTTT ATTTGACCTC TAAATACTTG GCCACACCCT
  GGCTTACCTG GGCAACAAAG GCAGGACCAT TATCTGACAC T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137219626	ENSMUSSNP1096030	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs50139100					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48215807 () rs orientation: forward

Symbol	Name	Function Class
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Rr195312	regulatory region 195312	607 bp distal
Rr195313	regulatory region 195313	594 bp proximal
Rr209369	regulatory region 209369	573 bp distal
Rr383325	regulatory region 383325	within coordinates