rs50139523 SNP Detail

Summary

• ID
  rs50139523
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:30913399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACC CTGTCTCTAA AAGAGAAACA
  K
  TCCTGAATAC CAAAAAAAAA AAGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148848289	ENSMUSSNP5741272	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss319676652	CHEV_1_30931163	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50139523					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:30913399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi99	CpG island 99	46 bp distal
Gm7256	predicted gene 7256	843 bp downstream
Gm70275	predicted gene, 70275	614 bp upstream
Phf3	PHD finger protein 3	410 bp upstream
Rr371054	regulatory region 371054	within coordinates
Rr408756	regulatory region 408756	748 bp distal
Rr408757	regulatory region 408757	247 bp distal
Rr408758	regulatory region 408758	191 bp proximal
Rr408759	regulatory region 408759	692 bp proximal
Tssr6135	transcription start site region 6135	305 bp downstream
Tssr6136	transcription start site region 6136	690 bp upstream
Tssr11167	transcription start site region 11167	661 bp upstream
Tssr11168	transcription start site region 11168	393 bp upstream
Tssr11169	transcription start site region 11169	1593 bp downstream