rs50139876 SNP Detail

Summary

• ID
  rs50139876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47691451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTGGAG CTTTTATGAG
  GTGGGCTCAG GAGAAGGTTA TTAGAGGTAT GTCCTGATGA GAGCTGTCGA TTCTCATCTT
  GACTTCTTTC TTTGGCTTTC TGACCACAAG ATGCACAGTC TTGGTTTGAT ACATTCCCTT
  CCTGTGATAC TGATGTCAAC AGAAAGCTTG TTGCTCAGCA TTCACAGAAG CTGTATGGCT
  R
  TAATTTCTCA CTGTTGCGAC TTGTGCTGGG TAGTTTTATG TCAACTTGAC ACAAGCTAGA
  GTCATCAGAA AAGAGGGAAC CTCAGTTGAG ATAATGTCTC CATAAGATTC ATCTGTAAGG
  CATTTTCTTA ATAGTGATCA ATGAGGGAGG GCCCAGGCCA TTATGGGAGG AGCTAATCCT
  GGGCTTGTGG TCTTGGGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61788740	NES17713105	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50139876					SNP	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61788740	NES17713105	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47691451 () rs orientation: forward

Symbol	Name	Function Class
Rr479106	regulatory region 479106	608 bp distal