rs50141422 SNP Detail

Summary

• ID
  rs50141422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56528555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCAAATG AAGGGATGGT
  AGAAAACTCT AAGGCTAATG AGGGGAAAGC CCATGCATAA GGACGGGGAT CTTCTTCTGG
  GTTGGAACAC TCTCGAGATC CACAAAAGAA TGAGAATCTA GTGGGGCCGA GAAACACCTC
  ATAGGATGAA GCCCACAGGA GGCAAGGTGA CTTGAGCAAG GCCACCTGGA GACCAGTGTA
  Y
  TGCAAAGGCC CTAAACACTC AAGACTGCAT CAGTGGAACA TGAGAACGGC TGGACAAATG
  ACCGTCTCCA CTTTAATCTG CAGGCTTAGC TACTGCTGGG TTATGCCTTC AGACCCCTCC
  AGCTTCGTCC CACTTTGGTC CCCTCTTTTC CCTGGGATTC AGCTATCCCT CCCCCAAACA
  CCTGCTCATT AAGTGGCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61809668	NES17749530	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50141422					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809668	NES17749530	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56528555 () rs orientation: forward

Symbol	Name	Function Class
Rr272828	regulatory region 272828	555 bp distal
Rr284344	regulatory region 284344	46 bp proximal