rs50141544 SNP Detail

Summary

• ID
  rs50141544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCAGGA AACACTGCCT
  GGGCTGCAAG GAGGGGACCA GTTGGAATGA ATGAGCCAGG ATCAGAGCCG GGGCGGGGCG
  AAGAGAAGCG CACAGCCTTG AATGCTAGCT TTGGGCGCGC ACGGGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGG GGTGATGATG GCAAGACCCC AGCCCAAGAG
  R
  TCTTTGCCTT TGGATATTAG AATTTCCCTG GCGAGCTGCA AGGAAGAGTG GAAGAGATTT
  GGGTGCTTCC CGAGAGGAGG GAAGGAAACC TGTAGCTTGG AGCAAGAGTT TCCAAACTAT
  CTGGACTATC ACTGGCATTT TTATTTTGCC TGTGGCCTTG GAGGCGCCCC TCGCCTCTTG
  AGGCTGCAGT TGGCATGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147119772	ENSMUSSNP6105564	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320439905	CHEV_2_102499927	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50141544					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	15 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1101 bp distal
Rr561714	regulatory region 561714	958 bp distal
Rr561715	regulatory region 561715	479 bp distal
Rr561716	regulatory region 561716	within coordinates
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19098	transcription start site region 19098	1531 bp downstream
Tssr19099	transcription start site region 19099	1459 bp downstream
Tssr19100	transcription start site region 19100	1190 bp downstream
Tssr19101	transcription start site region 19101	1101 bp downstream
Tssr19102	transcription start site region 19102	1075 bp downstream
Tssr19103	transcription start site region 19103	1028 bp downstream
Tssr19104	transcription start site region 19104	1006 bp downstream
Tssr19105	transcription start site region 19105	936 bp downstream
Tssr19106	transcription start site region 19106	918 bp downstream
Tssr19107	transcription start site region 19107	898 bp downstream
Tssr19108	transcription start site region 19108	862 bp downstream
Tssr19109	transcription start site region 19109	820 bp downstream
Tssr19110	transcription start site region 19110	538 bp downstream