rs50141797 SNP Detail

Summary

• ID
  rs50141797
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181285051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTAGTTTAAG GAACTGTTAA TAATGGTTGT TTTTGTTATT
  TGTTCTTTTT TTTTTTCTTT ATTTCTTTGT TTTAGATAGT CTCATTGTAG TCTCACAGGC
  T
  GACCTCAAGC TGACAGAAAT CCTTCTTTAA TCTCCCAAGT GCAAAGTTTA CAGGCAAGAG
  CCTCTAAGCC AAAGTAATGA AAAATGTATT TTTACTGAAA T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148402820	ENSMUSSNP1677047	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs50141797					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181285051 () rs orientation: forward

Symbol	Name	Function Class
Prpf6	pre-mRNA splicing factor 6	Intron
Rr573060	regulatory region 573060	1217 bp proximal
Rr573061	regulatory region 573061	1300 bp proximal