rs50141840 SNP Detail

Summary

• ID
  rs50141840
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:50297142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTTGGAAG ATCCCCCATA TGTTAATCAC AGAGGAGACC
  TTTTGGATTC AGGATTGAGT CTCTTCTACA ACTTGGAGAT AACTAGGTTC TCAATCAATA
  S
  AAACTATTCT TGTGGAAGAG GTCACAGGTA CTTTGTAACA GACATGAACT TTACAAAAGG
  AGTTTCGGTG TTGTCACTCC TTATGCTTTA TTGTGATAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss139454936	ENSMUSSNP7083031	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324615137	CHEV_14_50679360	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50141840					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:50297142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6404	CpG island 6404	1995 bp proximal
Gm37194	predicted gene, 37194	1675 bp upstream
Rr491685	regulatory region 491685	1372 bp proximal
Tssr125363	transcription start site region 125363	1672 bp upstream