rs50142251 SNP Detail

Summary

• ID
  rs50142251
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153614642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAT AGAATTCCAT ACAGCATAGA
  W
  TTCCAGTCTA TCTGTTTGCC AATCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60819985	NES16431204	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50142251					SNP	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60819985	NES16431204	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153614642 () rs orientation: forward

Symbol	Name	Function Class
C230024C17Rik	RIKEN cDNA C230024C17 gene	1067 bp upstream
Cpgi870	CpG island 870	1267 bp proximal
Gm28513	predicted gene 28513	within coordinates
Rgs16	regulator of G-protein signaling 16	1457 bp upstream
Rr420740	regulatory region 420740	1078 bp distal
Rr420741	regulatory region 420741	684 bp distal
Rr420742	regulatory region 420742	676 bp proximal
Rr420743	regulatory region 420743	1314 bp proximal
Tssr9477	transcription start site region 9477	1448 bp upstream
Tssr9478	transcription start site region 9478	1639 bp upstream