rs50142913 SNP Detail

Summary

• ID
  rs50142913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78955050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTTAAG TGGGTTCTCT
  GAAAGGGGGG AAGTTGGTTT TTTCTCCTGG TGGTGTTTCT CCCAGGAACA GCTAAGGCGC
  TTCCTTTGAG GGAAACCCCT GTCCCAGCCC ACCCCGTCTG ATTCACTGGA CCTTCAGTGT
  GACTCACCTC CTCTGTCTTC CCCAGTCTGT CATGACTGCA CCACCAACCT ACCAAGGAAC
  Y
  GCGATGACAT AAACCCAGCT CAACCAGAAG AAAACAGACA GCAGGAACGC TTGGACTTGG
  GGAGGAGGAA GGAACCTCCA GACTCAGGCA GACACCTTTT AGTTATGAAG GGCCAGGCAA
  TGCCTATCAC GTATCAGTGA GTAGAGAAAG CTGTTAGATG AGTGTTTGTA TGCAATGACT
  CATAGCCTAA TGTGAATTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61654173	NES17605755	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50142913					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61654173	NES17605755	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78955050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4796	CpG island 4796	1014 bp distal
Plek2	pleckstrin 2	1312 bp upstream
Rr265602	regulatory region 265602	849 bp distal
Rr387474	regulatory region 387474	1545 bp upstream
Tssr116799	transcription start site region 116799	1306 bp upstream
Tssr116800	transcription start site region 116800	99 bp downstream