rs50144300 SNP Detail

Summary

• ID
  rs50144300
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67599562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGCCCAGA ATCACCATGC
  CCAGGCAAAG ACCTTCACCC AGCCAACACT GCCCAGGCAA TCCTTGAACT TACAAGCTTC
  TCCATTCCTT GATTTCTGTC AGTCTAACGC AGGGGTCAGT CCCACCAACC CCCGCAGCGC
  CCTCTCACCA GCCCTGTCCA GAAAGCTCCT CCAAATCAGC TCTTCCCAGC TCCCATTCCA
  C
  CCGGTCCCTG TTCCTTCCGG AACTATGCAC CCCGCACAGA CCCTGGGATG ACTGAACCCT
  GGACCAACCT CCATGTCAGA GATCCAACGG GAGAGCACAG CAGGACCAGA GTCTGGCCCA
  GCTTTGGATA AGAGCCGCAC ATGCTTACTA AAAGATGAAC TGTTTACTAA AAGTGCAGAC
  CTGTGACGTC ACCGTGCTGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149266923	ENSMUSSNP800495	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50144300					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67599562 () rs orientation: forward

Symbol	Name	Function Class
Gm38307	predicted gene, 38307	215 bp upstream
Rr388629	regulatory region 388629	within coordinates
Tssr120253	transcription start site region 120253	184 bp downstream
Tssr123102	transcription start site region 123102	148 bp downstream
Zfp874a	zinc finger protein 874a	within coordinates