rs50145345 SNP Detail

Summary

• ID
  rs50145345
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23118049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT CCGCAGGTTT ACAAGTGTCG
  R
  GCGCTTCCTT TTGGAACGCC CTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146216163	ENSMUSSNP3057223	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss325768033	CHEV_19_23215175	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50145345					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23118049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	within coordinates
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	58 bp downstream
Klf9	Kruppel-like transcription factor 9	541 bp upstream
Rr405898	regulatory region 405898	within coordinates
Rr545290	regulatory region 545290	532 bp distal
Rr545291	regulatory region 545291	within coordinates
Rr545292	regulatory region 545292	419 bp proximal
Tssr155578	transcription start site region 155578	574 bp downstream
Tssr155579	transcription start site region 155579	137 bp upstream
Tssr155580	transcription start site region 155580	255 bp upstream
Tssr155581	transcription start site region 155581	271 bp upstream
Tssr155582	transcription start site region 155582	294 bp upstream
Tssr155583	transcription start site region 155583	334 bp upstream
Tssr155584	transcription start site region 155584	379 bp upstream
Tssr155585	transcription start site region 155585	441 bp upstream
Tssr155586	transcription start site region 155586	498 bp upstream
Tssr155587	transcription start site region 155587	957 bp upstream
Tssr155588	transcription start site region 155588	991 bp upstream
Tssr158621	transcription start site region 158621	32 bp upstream
Tssr158622	transcription start site region 158622	282 bp downstream
Tssr158623	transcription start site region 158623	1371 bp downstream
Tssr158624	transcription start site region 158624	1685 bp downstream