rs50145867 SNP Detail

Summary

• ID
  rs50145867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30735741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTGAGCCC AGCCTTAATT TCAATTTTGA AAATTTAGAG
  CTCAGAAAGC AACCTCCTAG CCATCCACAT GATGACCTGG TTGGCTCCAT GGCACTTAGG
  Y
  ATGTGCTACC ACCCAGTCTG ACAGCACAGT TTCCTCCATA GCACGAGCCC TGAAGATTTA
  CCCACACGGT AAAGAAACTA CAGAGTGCCT GTTTCTGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60989536	NES16136141	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C		T	C	T	T		C
ss322138593	CHEV_7_31821335	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50145867					SNP	C	C	C	C	C	C	T	T	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989536	NES16136141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30735741 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	527 bp upstream
Gm71772	predicted gene, 71772	673 bp upstream
Rr644978	regulatory region 644978	1958 bp distal
Rr644979	regulatory region 644979	1237 bp distal
Rr644980	regulatory region 644980	1292 bp distal
Rr644981	regulatory region 644981	583 bp proximal
Rr644982	regulatory region 644982	684 bp proximal
Tssr2191	transcription start site region 2191	831 bp upstream
Tssr65830	transcription start site region 65830	1048 bp downstream
Tssr65831	transcription start site region 65831	672 bp upstream
Tssr65832	transcription start site region 65832	1092 bp upstream
Tssr65833	transcription start site region 65833	1489 bp upstream
Tssr65834	transcription start site region 65834	1543 bp upstream
Tssr71891	transcription start site region 71891	141 bp downstream
Tssr71892	transcription start site region 71892	702 bp downstream
Tssr71893	transcription start site region 71893	1544 bp downstream
Tssr71894	transcription start site region 71894	1565 bp downstream
Tssr71895	transcription start site region 71895	1578 bp downstream
Tssr71896	transcription start site region 71896	1608 bp downstream