rs50148164 SNP Detail

Summary

• ID
  rs50148164
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30093648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTTGATC CTTTGGCCTG
  CAGCTCCCAA GCACTGGGAT TACTGGACTG TACTACCATA CCCGGCTAAG ACACGTAAAT
  TTAATTAAAC TTACATTCTC ATAGAGCTCT TTCCCAGAGA GTAAAGTCCA GAGAAATCTA
  CCACTGCAAG AGGCTTTTAT TCTTTAGACA AAGAAGAGTA AGTCTTAGAG CAGAGACAGA
  A
  CAGAGGGTAG CTGAAGACTG GGGACTGCGT GATAAAAACA TGTGGAGAGA ATTTAGCAGA
  TCCCTGATGC CTGGTTCTGA GTTGATTAAA AATTGTCTCT GGTAAAGGAG GATTTATGTT
  CTGCCTTGAG GCAGACAGAT GACAAGGACA GTGAGGAAAG TCCCTCTGCA TTCTAACCTT
  CCTCAACTCC ACCAGCCTCG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148676562	ENSMUSSNP3989370	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50148164					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30093648 () rs orientation: forward

Symbol	Name	Function Class
Gm42376	predicted gene, 42376	within coordinates
Rr155978	regulatory region 155978	1848 bp distal
Rr155979	regulatory region 155979	753 bp proximal
Tssr2182	transcription start site region 2182	147 bp downstream
Tssr2183	transcription start site region 2183	603 bp upstream
Tssr71732	transcription start site region 71732	85 bp downstream
Tssr71733	transcription start site region 71733	207 bp downstream
Tssr71734	transcription start site region 71734	299 bp downstream
Tssr71735	transcription start site region 71735	341 bp downstream