rs50148393 SNP Detail

Summary

• ID
  rs50148393
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130554387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA GGTCTGGTAC ATTTTATCTG
  S
  GTTCTAAAAT TGGCTCACTG CAGAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135899359	ENSMUSSNP6408577	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320966492	CHEV_3_130463656	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50148393					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130554387 () rs orientation: forward

Symbol	Name	Function Class
Gm42997	predicted gene 42997	within coordinates
Gm43522	predicted gene 43522	within coordinates
Gm65129	predicted gene, 65129	1183 bp upstream
Rr585206	regulatory region 585206	1600 bp distal
Rr585207	regulatory region 585207	within coordinates
Rr585208	regulatory region 585208	187 bp proximal