rs50149303 SNP Detail

Summary

• ID
  rs50149303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61760769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGACAC AAGCTCCGGG
  GGTACCGGCT AGCTTGGCGC TTTGTAAACA CAGGCGTTGA CAGCTGAAAC CTGGCCTCCA
  GTGGAATTTA CACTATAGAA ATTGGTAGTG CAACAAAGCA TCTTTCTACC CCACAAACCG
  GTTGTTAAAC ATCTTAGTGC ACCACCGCTC ACATCTGTCC GGCTCTCTTC AATCACAAAC
  R
  TTTCCAGACG TTTCCAGGTT AAAATGAATA CCAGGGGCCT GGCCATCCGT CTATCTGTCT
  ATCCGTCTGT CTGTCTCTAC TGCAGAATGG AAGGAAGACC TCTAAGCAAA ATGGCCAGCC
  ACCATCTTCC TCAGATTGGC TATGGCAAAT GCTCCTCACA GCCAAGTGAC CTGACTGTCA
  ATGTCCCCTC CTAGGAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61280638	NES16779766	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50149303					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280638	NES16779766	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61760769 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates
Gm30121	predicted gene, 30121	within coordinates
Rr223137	regulatory region 223137	708 bp proximal