rs50150389 SNP Detail

Summary

• ID
  rs50150389
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45866736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATC CGCTCCCCGC GCCTGCACAG
  S
  CAGGTAATGA AGCCGCTCGG AGAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60259847	NES15755745	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C	G	C	C	G	C	G		C	C	C		G
ss325403387	CHEV_17_45692759	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50150389					SNP	G	G	C	C	G	C	C	G	C	G	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259847	NES15755745	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45866736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	within coordinates
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	within coordinates
Rr405302	regulatory region 405302	37 bp downstream
Rr527427	regulatory region 527427	836 bp distal
Rr527428	regulatory region 527428	89 bp distal
Rr527429	regulatory region 527429	901 bp proximal
Tssr144787	transcription start site region 144787	137 bp downstream
Tssr144788	transcription start site region 144788	96 bp downstream
Tssr144789	transcription start site region 144789	64 bp downstream
Tssr144790	transcription start site region 144790	11 bp downstream
Tssr144791	transcription start site region 144791	within coordinates
Tssr144792	transcription start site region 144792	68 bp upstream
Tssr144793	transcription start site region 144793	449 bp upstream