rs50151522 SNP Detail

Summary

• ID
  rs50151522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121980529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCAATGTC TTCACAAGTA CACCTTTGGG AACTTGACTG
  TGTGTATGTG TGTGTGCACA TACAAATAAC AATGGAAAGA GTTTACATTA TTTTCTTTCC
  R
  TGTCCCTATA GCGTGCAGTA GCTATTCCCA ACATGTTGAG CGACTTCAGC TATCTGAAAG
  CCCCATATCC CCTTGCACAC ACTGCTTACT TCCAGCAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147410056	ENSMUSSNP6834596	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320487214	CHEV_2_121975784	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50151522					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121980529 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Cpgi12169	CpG island 12169	1804 bp distal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19807	transcription start site region 19807	864 bp downstream
Tssr19808	transcription start site region 19808	790 bp downstream
Tssr19809	transcription start site region 19809	474 bp downstream
Tssr19810	transcription start site region 19810	514 bp upstream
Tssr19811	transcription start site region 19811	827 bp upstream
Tssr19812	transcription start site region 19812	862 bp upstream
Tssr19813	transcription start site region 19813	886 bp upstream
Tssr19814	transcription start site region 19814	909 bp upstream
Tssr19815	transcription start site region 19815	925 bp upstream
Tssr19816	transcription start site region 19816	941 bp upstream
Tssr19817	transcription start site region 19817	964 bp upstream
Tssr19818	transcription start site region 19818	987 bp upstream
Tssr19819	transcription start site region 19819	1044 bp upstream
Tssr25955	transcription start site region 25955	862 bp downstream
Tssr25956	transcription start site region 25956	939 bp downstream
Tssr25957	transcription start site region 25957	1057 bp downstream