rs50151878 SNP Detail

Summary

• ID
  rs50151878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:30528840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAT TATAAAGAGG TCAATAAAGT
  Y
  GGTAGCCTTA GGTGAACTCA AAATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	LG/J	MOLF/EiJ	MSM/Ms	SM/J	WSB/EiJ
ss52363828	NES15389149	PERLEGEN	MM_PANEL2	f	SNP	C			T		T			C
ss137553635	ENSMUSSNP5058342	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				T
ss323988641	CHEV_12_31163706	CHEVERUD	SCREENING_POP	f	SNP					C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	LG/J	MOLF/EiJ	MSM/Ms	SM/J	WSB/EiJ
rs50151878					SNP	C	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52363828	NES15389149	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:30528840 () rs orientation: forward

Symbol	Name	Function Class
Gm28806	predicted gene 28806	361 bp downstream
Tssr113087	transcription start site region 113087	222 bp upstream