rs50153804 SNP Detail

Summary

• ID
  rs50153804
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3667992 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTCACCGTGC TCAAAGTCCT
  CATCCCATGT GACACAGATG GGAAGGGCTT GGCTCTGGAC ACAGAGCCTT GGCATCCTGT
  TAGATTTTCC TGTGGTGGCC CTAGAGATTG GCTCCCCACC AGGCAGAGCG GAGTGGAGAG
  TCAGCCTTCC CTGAGTAGCT CTTTGCTGTA GGCTTTCAGG AAAGTCTCTT TGATCTTCAG
  W
  GTGGGAAGGA AAGGGGTGGT ACTCTTCAGC GAGAGACTAT AGTAACAACG ATCTACTCCT
  GGCTTTGTCA GGGTCTCAAG AGAACGAAAA TCCTCCTTTG GTCTCCAGCA AGGAGTGGGG
  GCAGCATCTG TCTGAGAGTG GAGCCTACAG TCCAGGGACC TGGGCTGGAA TCCTGGATTC
  CCTCTTCTAC AGGTTGAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146748684	ENSMUSSNP1249555	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss323242496	CHEV_10_6628549	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50153804					SNP	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3667992 () rs orientation: reverse

Symbol	Name	Function Class
A330032P22Rik	RIKEN cDNA A330032P22 gene	166 bp upstream
Gm56946	predicted gene, 56946	within coordinates
Rr426848	regulatory region 426848	within coordinates
Rr426849	regulatory region 426849	182 bp proximal
Tssr92213	transcription start site region 92213	160 bp upstream