rs50154391 SNP Detail

Summary

• ID
  rs50154391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51371238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCAGAAAG GACACATGAG TCAATGAGCC CTAGCACCAC
  CACCACCACA CCACCACCAC CGCCACCACC ACTACTCTCC AATCCACCTG TACTCATTCA
  Y
  CCTGTTATCC ACAGACAATT CCTTTTGTAT AAGTTTGAGG ATGATTTTAT TAGGGTTTAA
  AGAAAAATGT AGCACAGGCA ATCCGTTAAT CTTAGCAGCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	WSB/EiJ
ss52288593	NES15304594	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	WSB/EiJ
rs50154391					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288593	NES15304594	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51371238 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93273	transcription start site region 93273	1957 bp downstream
Tssr93274	transcription start site region 93274	1424 bp downstream
Tssr93275	transcription start site region 93275	1291 bp downstream
Tssr93276	transcription start site region 93276	1237 bp downstream
Tssr93277	transcription start site region 93277	1189 bp downstream
Tssr93278	transcription start site region 93278	1153 bp downstream
Tssr93279	transcription start site region 93279	997 bp downstream
Tssr93280	transcription start site region 93280	550 bp downstream
Tssr93281	transcription start site region 93281	502 bp downstream
Tssr93282	transcription start site region 93282	484 bp downstream
Tssr93283	transcription start site region 93283	394 bp downstream
Tssr93284	transcription start site region 93284	26 bp downstream
Tssr93285	transcription start site region 93285	139 bp upstream
Tssr93286	transcription start site region 93286	253 bp upstream
Tssr93287	transcription start site region 93287	615 bp upstream
Tssr93288	transcription start site region 93288	875 bp upstream
Tssr93289	transcription start site region 93289	943 bp upstream
Tssr97556	transcription start site region 97556	631 bp upstream
Tssr97557	transcription start site region 97557	294 bp upstream
Tssr97558	transcription start site region 97558	879 bp downstream
Tssr97559	transcription start site region 97559	1349 bp downstream
Tssr97560	transcription start site region 97560	1445 bp downstream