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rs50154449 SNP Detail
Summary
  • ID
    rs50154449
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr9:44438806 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTCTT GTCCTGGTGG GTTTTCTTCC
    G
    CGGGAGGATA TTTCCTGACT TAGGC                                      
    
    G = G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss136396642 ENSMUSSNP2626342 ENSEMBL ENSEMBL_Sanger f SNP G G G
ss322941046 CHEV_9_44335592 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs50154449 SNP G G G G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:44438806 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cxcr5 C-X-C motif chemokine receptor 5 1065 bp upstream
Rr200338 regulatory region 200338 594 bp proximal
Rr206318 regulatory region 206318 1605 bp distal
Rr401337 regulatory region 401337 718 bp downstream
Tssr89167 transcription start site region 89167 1537 bp upstream
Tssr89168 transcription start site region 89168 1086 bp upstream
Tssr89169 transcription start site region 89169 1069 bp upstream
Tssr89170 transcription start site region 89170 1008 bp upstream
Tssr89171 transcription start site region 89171 994 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory