rs50155568 SNP Detail

Summary

• ID
  rs50155568
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCTGAG TATGTGTTTG
  AGTATGAGCG TCTTTTGTGA CCATCAGTGA CTGAGAGTGT CTGCTGCAGG GTGGGTACAG
  ATACAGACAG CACTGAGCGC ACGGGTAGAT GTTTCTACAC GCGGGACTGC CAATGACTGT
  CCATCCCAGC AGCTGCACTC CACTTCCTTC TGCCGGTTGG TCTCACATCT CAGGCTCCCT
  S
  CAGCTGCCAT TCTAGGGTCC CTCATTTGCA GTCACACTGA CCTTGCCTGG TTTGCAAGGC
  TGAGAAGGGG GATGGCATGT GGAGCAGTGG CTGCAGTTTT CAGGGTGCTC ACTCCAGCCT
  ACACTGAGCT GAGATGCCCC AGAGTGGCTC TTTATAAGCC TGAATGAAGT GTCATACATC
  TCAGAAAGGA CAGGGCGGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52651847	NES15472018	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C		G	C	C	G		C
ss324417494	CHEV_13_70981677	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50155568					SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651847	NES15472018	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990918 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	988 bp upstream
Cpgi5821	CpG island 5821	959 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482303	regulatory region 482303	1056 bp distal
Rr482304	regulatory region 482304	498 bp distal
Tssr123158	transcription start site region 123158	1083 bp upstream
Tssr123159	transcription start site region 123159	1045 bp upstream
Tssr123160	transcription start site region 123160	1016 bp upstream
Tssr123161	transcription start site region 123161	989 bp upstream