rs50156292 SNP Detail

Summary

• ID
  rs50156292
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51360391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCATCTCA GCTGCCATAG ACCTCACTTC CACCTGATTG
  TCCCTGTCTT CACAGCTCTA ACCCAGAGGC TACCATCAAT GAAAAACACC TGTGTGAGAA
  W
  AAGAGGGCCC TGGGGACTAT ATGCACTAAA CCTCAGTATC AGAGGTCTGA TGGGGAGTGT
  GGTGGGTCAG GTCTTGGAGG AAAAGAACCC TAACAATGGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52289064	NES15304929	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50156292					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289064	NES15304929	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51360391 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	within coordinates
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	within coordinates
Tssr93243	transcription start site region 93243	1682 bp downstream
Tssr93244	transcription start site region 93244	1411 bp downstream
Tssr93245	transcription start site region 93245	875 bp downstream
Tssr93246	transcription start site region 93246	690 bp downstream
Tssr93247	transcription start site region 93247	647 bp downstream
Tssr93248	transcription start site region 93248	606 bp downstream
Tssr93249	transcription start site region 93249	440 bp downstream
Tssr93250	transcription start site region 93250	14 bp upstream
Tssr93251	transcription start site region 93251	53 bp upstream
Tssr93252	transcription start site region 93252	156 bp upstream
Tssr93253	transcription start site region 93253	351 bp upstream
Tssr93254	transcription start site region 93254	478 bp upstream
Tssr93255	transcription start site region 93255	705 bp upstream
Tssr93256	transcription start site region 93256	817 bp upstream
Tssr93257	transcription start site region 93257	1180 bp upstream
Tssr93258	transcription start site region 93258	1415 bp upstream
Tssr93259	transcription start site region 93259	1457 bp upstream
Tssr97554	transcription start site region 97554	1454 bp downstream