rs50156533 SNP Detail

Summary

• ID
  rs50156533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73189857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTT AAGTATTAAT AGCATTCCAA
  R
  ATTTTTGTGG TTACAGATTT AATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61020019	NES16105296	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	A		G	A	A	G		G
ss322260285	CHEV_7_80684995	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50156533					SNP	A	A	A	A	A	A	G	A	G	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020019	NES16105296	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73189857 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	within coordinates
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	1951 bp distal
Gm44686	predicted gene 44686	within coordinates
Rr167999	regulatory region 167999	within coordinates
Rr380950	regulatory region 380950	1395 bp downstream
Rr380951	regulatory region 380951	1203 bp upstream
Tssr67205	transcription start site region 67205	731 bp downstream
Tssr72948	transcription start site region 72948	836 bp upstream
Tssr72949	transcription start site region 72949	779 bp downstream
Tssr72950	transcription start site region 72950	976 bp downstream
Tssr72951	transcription start site region 72951	1316 bp downstream
Tssr72952	transcription start site region 72952	1387 bp downstream
Tssr72953	transcription start site region 72953	1610 bp downstream
Tssr72954	transcription start site region 72954	1629 bp downstream
Tssr72955	transcription start site region 72955	1714 bp downstream