rs50157442 SNP Detail

Summary

• ID
  rs50157442
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87957371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACACGGT AGACTCTTAG
  GAACAGTCTT GGGGTGAGTT CTGTGACAGG CCACTTCATA CTACTTTCTG TTTCCTTGAC
  AAGTGGCGCA GAAGCCTCTG GCTTTAGATT TTGGAGTCTT GTGGAGGTAT ATTCTAGTGA
  AGCCATGTAT ATTCTAGAGA AACCCAGTAT GAGTGCTGAC CTGATTTCCC GTGTCTCTAC
  M
  AGTTTATAAT AATCGTTTGA GTTGGGCATA GGATGCACAC CTTTAACCCC CCAGTACTAG
  GGAGACAAAG GCCAGCTAGG GCTACACTGA GAAATAATAA ACTCAAAATT TATTTATTTA
  GATCCAGGGT CCCTTTACAT AGCCCTGCTA TTTATTTAGA TCCAGGGTCC CTTTACATAG
  CCCTGGCTGT CCTGGAACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60290174	NES15780226	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50157442					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60290174	NES15780226	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87957371 () rs orientation: forward

Symbol	Name	Function Class
Epcam	epithelial cell adhesion molecule	within coordinates
Tssr146206	transcription start site region 146206	1598 bp downstream
Tssr146207	transcription start site region 146207	489 bp upstream
Tssr146208	transcription start site region 146208	509 bp upstream
Tssr146209	transcription start site region 146209	548 bp upstream
Tssr146210	transcription start site region 146210	622 bp upstream
Tssr146211	transcription start site region 146211	879 bp upstream