rs50157989 SNP Detail

Summary

• ID
  rs50157989
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70418633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GTTTATCAGT GCGCTGTTCT TTTATCATTA CTAGCATTAT TGGATTATTT
  K
  GGGGATGGCT GGTTGCATTA TGTTTTTAAA TAAAATGGTT TGTTTTATGT           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132372388	ENSMUSSNP3733529	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss323735985	CHEV_11_70341309	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50157989					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70418633 () rs orientation: forward

Symbol	Name	Function Class
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Tssr102729	transcription start site region 102729	1876 bp downstream
Tssr102730	transcription start site region 102730	1832 bp downstream
Tssr102731	transcription start site region 102731	1773 bp downstream
Tssr102732	transcription start site region 102732	1107 bp upstream