rs50158270 SNP Detail

Summary

• ID
  rs50158270
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:113811262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATATAAAA TAGCAAAACA
  GTGGGAATAA TACTGATGGT GTCCCTTTAA AATTCTTCCT GCCATAGACA GGTAGTATTC
  TGCCATCCAA GGATTACATA ATCTTTCCAC ATGCAAAATG TTTTAAGTTT TCCTGAGGCT
  CATCCCATTG CAGTTTTAGT TACAAGTAAA TGATTTCAAC TATATCCACA GAGATTAAAA
  K
  CATACAAACT TATCGTCTTA ATAATCTAAG TAAAATGCAG ATGAGACTTT TCAATGCAGT
  CCTTTCTGTA CCAATTCCAT GCATAATTCT TTCCCATAAG GGGTCCTTAA ATATAAGGAT
  AAAAAATATA TTATTGCCTG CAAGGCATAT TACAATGGTG TATATAGGTG TTTCTTATAG
  ATAATCTTGT TCCAATAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52520528	NES15586824	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50158270					SNP	T	T	T	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52520528	NES15586824	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:113811262 () rs orientation: forward

Symbol	Name	Function Class
Tssr4518	transcription start site region 4518	697 bp upstream