rs50159428 SNP Detail

Summary

• ID
  rs50159428
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85429393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC ACCTGCCCCT CCCTCTAAGC
  T
  GGCCTCACCT GGGCCCCTTT CTACA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145392328	ENSMUSSNP6440680	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322751400	CHEV_8_87226663	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50159428					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85429393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20707	CpG island 20707	755 bp distal
Cpgi20708	CpG island 20708	903 bp proximal
Lyl1	lymphoblastomic leukemia 1	within coordinates
Nfix	nuclear factor I/X	1948 bp downstream
Rr178191	regulatory region 178191	1793 bp distal
Rr187001	regulatory region 187001	within coordinates
Rr368567	regulatory region 368567	1753 bp upstream
Rr401025	regulatory region 401025	1279 bp downstream
Tssr78433	transcription start site region 78433	1267 bp downstream
Tssr78434	transcription start site region 78434	995 bp downstream
Tssr78435	transcription start site region 78435	966 bp downstream
Tssr78436	transcription start site region 78436	937 bp downstream
Tssr78437	transcription start site region 78437	882 bp downstream
Tssr78438	transcription start site region 78438	854 bp downstream
Tssr78439	transcription start site region 78439	627 bp upstream
Tssr82116	transcription start site region 82116	1038 bp upstream