rs50160418 SNP Detail

Summary

• ID
  rs50160418
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127482742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATGAAAT CTTTAGCCTC
  CAATAAAATT GTTTTTATAT AGTAATAATA ATTACAGTTC TTCATGTTGT GGTGACCCCA
  ACAATAAAAC CATGTTCCAT AACTGATTTT GCTAGTTATG AATGTTGTGT AATGTCAATA
  TCTGTATTTT CTGATGGTCT TAGGTGACCC ACAGGCTGAG AACCACTGGG TTAAAAGCAT
  K
  TGTTGCTCTC ACAGATTTCA GGTCCCAGAC CTTTGGGTGG CTTATAGTCT TCTGTAACTC
  CAGTTCCACG GGCATATGAT ATCCAATTCT GGCCTCCATG GGCACCTGCA CTCATACACA
  TAGATTAAAA AGAAAAAAAG AAAAAACAAA AAAGCCCTCC AAATGTCATT GTCTCCTCCA
  GCTTTACCTG ATCACACAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135869006	ENSMUSSNP3756948	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50160418					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127482742 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Tssr35586	transcription start site region 35586	541 bp upstream
Tssr35587	transcription start site region 35587	1655 bp downstream