rs50160562 SNP Detail

Summary

• ID
  rs50160562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG AATTGGAGAA GCATCCGATT
  Y
  TCACCCTACC TCCATGAGGG GCGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007359	PARCsnp_1.17758	PARC_SEQ	INBRED	f	SNP		T	C
ss120010260	PARCsnp_1.07397	PARC_SEQ	INBRED	f	SNP		T	C
ss146183851	ENSMUSSNP1106736	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320123206	CHEV_1_174137666	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs50160562					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035102 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	582 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	804 bp upstream
Rr396578	regulatory region 396578	within coordinates
Rr423485	regulatory region 423485	742 bp distal
Rr423486	regulatory region 423486	241 bp distal
Tssr294	transcription start site region 294	902 bp upstream
Tssr295	transcription start site region 295	852 bp upstream
Tssr296	transcription start site region 296	776 bp upstream
Tssr297	transcription start site region 297	742 bp upstream
Tssr15164	transcription start site region 15164	870 bp upstream
Tssr15165	transcription start site region 15165	780 bp upstream
Tssr15166	transcription start site region 15166	749 bp upstream
Tssr15167	transcription start site region 15167	166 bp downstream