rs50160577 SNP Detail

Summary

• ID
  rs50160577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:23631254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCTTCTCT TCCCCTCTCT TTCCAGATCA TTCGCAAAGT
  CGTCCGGCAG GTAGACTCGT CTGGTGCCAT CGACACCCAG CAGCACGAGG AGGTGATTGT
  Y
  GAGGGTCCCC TGGCAGACCC TGGGGATCTG GAAGCAGATA TTGAGTCCTT TATGAAACTT
  ACTAAGGTAC CAAGGCACTG CAGGCCCCTG GAGGCCGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148849882	ENSMUSSNP4337724	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50160577					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23631254 () rs orientation: forward

Symbol	Name	Function Class
Ank1	ankyrin 1, erythroid	within coordinates
D8Rck1	DNA segment, Chr 8, Rockefeller University 1	127 bp proximal
Gm15816	predicted gene 15816	within coordinates
Mir486	microRNA 486	1317 bp upstream
Mir3107	microRNA 3107	1335 bp downstream
Tssr76619	transcription start site region 76619	1197 bp downstream
Tssr76620	transcription start site region 76620	1111 bp downstream
Tssr76621	transcription start site region 76621	1070 bp downstream
Tssr76622	transcription start site region 76622	1741 bp upstream
Tssr76623	transcription start site region 76623	1852 bp upstream