rs50160821 SNP Detail

Summary

• ID
  rs50160821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4523254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTTCCT TTGGTGATGA
  ACAGCAGTAT GGAAGTATAA GCCGAATAAA CCCTTTCCTC CCCAATTTGC TTCTTGGTCA
  TGATGTTTGT GCAGGAATAG AAACCGTGAC TAAGACAGCG TCTAACACAA CTTGAGCCCA
  CTCTGTGCAG ATCATTATTC CCTGTCCCAG AGCTCAACTC AATGCTCAGT TTCTACAGGC
  Y
  CGTTTGTGCC ACCCAGGCTC TACTCTGCAG AGACAGCTTC CTTTGCCACG AGGTACCTGT
  GCCACTGCCT GCTTTCTGCT TAGAGTTATC TCAAGCACAA GAGTCCATAG CCCCCAGCCC
  GAAGCTACAG TCTGGAGATC TTGGTGTAAT GTGAAGGTCC CAGGCTTCCC CGGGCTCCCC
  ACCTCAGTGA TGTTCTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60964949	NES16164643	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50160821					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60964949	NES16164643	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4523254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	1272 bp proximal
Rr641974	regulatory region 641974	1389 bp distal
Rr641975	regulatory region 641975	1174 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64334	transcription start site region 64334	844 bp downstream
Tssr64335	transcription start site region 64335	191 bp upstream
Tssr64336	transcription start site region 64336	1415 bp upstream
Tssr64337	transcription start site region 64337	1558 bp upstream
Tssr70483	transcription start site region 70483	1895 bp upstream
Tssr70484	transcription start site region 70484	1621 bp downstream