rs50161507 SNP Detail

Summary

• ID
  rs50161507
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22534506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG CACAAGGGAG GAAGAGGCAA
  C
  GGAGACAAGA GTTTAAGAGA TAAAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145304167	ENSMUSSNP1131602	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325324153	CHEV_17_22452492	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50161507					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22534506 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	688 bp upstream
Gm53992	predicted gene, 53992	within coordinates
Rr523017	regulatory region 523017	699 bp distal
Rr523018	regulatory region 523018	198 bp distal
Tssr146602	transcription start site region 146602	716 bp upstream
Tssr146603	transcription start site region 146603	679 bp upstream