rs50162043 SNP Detail

Summary

• ID
  rs50162043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99449358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATGTGTG TGTATGTGCA
  CTCGCACACG TCTTTTCAGG TGAACTATAG GATAAGTGCA ACCTAAATGG CACAATCAGA
  AAGAAACTGA GCAGTTACGA TACATTCTTT TCTCCTTTTA ATGCAAAGAG AGAAGTCATC
  GGTTTATTCT CCCACTAAAC ATTCATGGAC AATATAAAGT GAAATAATGA GCTAATGTGA
  Y
  CAGTAATTGG ACAGAAAGTA CTTCTCCAGT TGCAGTTTAA GTAAACAGTT TAGTAAGACG
  GATCTGGGGC TAGATTTGTT GACCGTCTTC CAAAATTGCA TTTTGCACTG TAGAGTGACT
  TCTGTCTTTT TGGGTAGCCA GCATGGCTCT AACCAGCCCT GACTGGAGTG ATGTACCTAG
  TGCCTTTGAA CACAAAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61443623	NES16826039	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs50162043					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443623	NES16826039	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99449358 () rs orientation: forward

Symbol	Name	Function Class
Armc8	armadillo repeat containing 8	within coordinates
Cpgi22196	CpG island 22196	808 bp proximal
Rr401625	regulatory region 401625	1500 bp upstream
Rr685420	regulatory region 685420	727 bp proximal
Rr685421	regulatory region 685421	1334 bp proximal
Tssr91072	transcription start site region 91072	1335 bp downstream
Tssr91073	transcription start site region 91073	1544 bp downstream