rs50162836 SNP Detail

Summary

• ID
  rs50162836
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:55679670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT CCACTCATGT AAGAGGCAAT
  C
  GTGCCTTTAT TTATAGAAAC ATGGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132150299	ENSMUSSNP6617239	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323676545	CHEV_11_55602346	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50162836					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:55679670 () rs orientation: forward

Symbol	Name	Function Class
D11Mit349	DNA Segment, Chr 11 Massachusetts Institute of Technology 349	504 bp proximal
Gm50502	predicted gene, 50502	within coordinates
Rr447615	regulatory region 447615	885 bp proximal
Rr447616	regulatory region 447616	1008 bp proximal
Rr447617	regulatory region 447617	1939 bp proximal