rs50164561 SNP Detail

Summary

• ID
  rs50164561
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85389926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC TCTTTTTATT CAATGTCTCT
  C
  ATCTCTCACC TCCACTCCAT AGAAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145391602	ENSMUSSNP543645	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322751234	CHEV_8_87187196	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50164561					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85389926 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	within coordinates
Cpgi20702	CpG island 20702	124 bp distal
Cpgi20703	CpG island 20703	738 bp proximal
Cpgi20704	CpG island 20704	1550 bp proximal
Gm26664	predicted gene, 26664	793 bp upstream
Gm50464	predicted gene, 50464	1944 bp upstream
Ier2	immediate early response 2	445 bp upstream
Rr368564	regulatory region 368564	709 bp downstream
Rr368565	regulatory region 368565	602 bp upstream
Rr368566	regulatory region 368566	1556 bp upstream
Rr401023	regulatory region 401023	240 bp downstream
Rr666565	regulatory region 666565	within coordinates
Rr666566	regulatory region 666566	441 bp proximal
Rr666567	regulatory region 666567	1312 bp proximal
Rr666568	regulatory region 666568	1848 bp proximal
Tssr2627	transcription start site region 2627	1801 bp upstream
Tssr78424	transcription start site region 78424	291 bp downstream
Tssr78425	transcription start site region 78425	914 bp upstream
Tssr78426	transcription start site region 78426	946 bp upstream
Tssr78427	transcription start site region 78427	1241 bp upstream
Tssr82105	transcription start site region 82105	1742 bp upstream
Tssr82106	transcription start site region 82106	1692 bp upstream
Tssr82107	transcription start site region 82107	438 bp upstream
Tssr82108	transcription start site region 82108	282 bp upstream
Tssr82109	transcription start site region 82109	226 bp upstream
Tssr82110	transcription start site region 82110	624 bp downstream