rs50165625 SNP Detail

Summary

• ID
  rs50165625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76476104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCATCTCT GTCCACACCA
  CAGTCGTGAG CATGCTCTGT GCACTTCATC ACAGGCTGGA AATAACACCT GGTGAGCGTG
  TTCTGTGGCA TGTGACGAGA CACATGTGCC TTCTGGGTGG TCTAACCGTG AACTTTCTCT
  AGATGGTGTT TGGGAGAAGC AACAGTTCCC TTATCACTTC TCAGAGATCA TATAATGAGC
  Y
  GGACTCACAC CGTGACCCCA CCACACAGCC TGCAGCCTTC AGACTGCCAG TCTTCTGGGT
  AATTAGAACA AGTCGGGCAC GTTTGGCTGC TTAGTTTAAG GCACTTATGG CGTGGCTTTG
  GCCTTCTGAC CCTGGAGTCT CTCACTTTCT TGGGTGTGGA TGGTCCTGAA AGCCTTCCTC
  TGGGAACGTG TGATGCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63183944	NES17459503	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50165625					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63183944	NES17459503	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76476104 () rs orientation: forward

Symbol	Name	Function Class
Rr347327	regulatory region 347327	697 bp proximal
Tssr151998	transcription start site region 151998	22 bp upstream