rs50165812 SNP Detail

Summary

• ID
  rs50165812
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83482209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA AGAGAGTAAA ATTTAAAATT
  W
  AGAAAACAAC CCACGATAGT CTTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133348048	ENSMUSSNP5043535	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50165812					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83482209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	1275 bp proximal
Dguok	deoxyguanosine kinase	within coordinates
Rr399724	regulatory region 399724	1650 bp upstream
Tssr1908	transcription start site region 1908	1854 bp upstream
Tssr61663	transcription start site region 61663	1029 bp downstream
Tssr61664	transcription start site region 61664	1589 bp downstream
Tssr61665	transcription start site region 61665	1603 bp downstream
Tssr61666	transcription start site region 61666	1611 bp downstream
Tssr61667	transcription start site region 61667	1638 bp downstream
Tssr61668	transcription start site region 61668	1662 bp downstream
Tssr61669	transcription start site region 61669	1668 bp downstream